PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_028880_mpsx.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28020.1 Da    PI: 8.8837
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_028880_mpsx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.7e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien   rqvtfskRr g+lKKA+ELSvLCdaevaviifsstg+l+e+s+
  Bv2_028880_mpsx.t1  9 KKIENANSRQVTFSKRRSGLLKKAHELSVLCDAEVAVIIFSSTGRLFEFSN 59
                        68***********************************************95 PP

2K-box60.76e-219117019100
               K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         +e++ Lk+ei +Lq +q +llG+dL+ L++k+LqqLe+qL+++l ++++kK++ll+eq+e+++   +++  en++Lr++++e
  Bv2_028880_mpsx.t1  91 KEIDSLKDEIAKLQVKQTRLLGKDLSGLNMKDLQQLEKQLNEALLSVKAKKDQLLMEQLEQSR--IQRALLENETLRRQIAE 170
                         79*********************************************************9765..56677788999999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.8161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-33275IPR002100Transcription factor, MADS-box
CDDcd002654.56E-43271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.6986174IPR002487Transcription factor, K-box
PfamPF014861.0E-1591168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKIEIKK IENANSRQVT FSKRRSGLLK KAHELSVLCD AEVAVIIFSS TGRLFEFSNS  60
SMKRTLARYK NALETSDVVI GKPKLEIEDF KEIDSLKDEI AKLQVKQTRL LGKDLSGLNM  120
KDLQQLEKQL NEALLSVKAK KDQLLMEQLE QSRIQRALLE NETLRRQIAE LRGFMTPSER  180
PEPMYLEYYP IETKVSFERN ATSGSDAVCN SSGPDKTDSD ITLHLGPPCD TIRKRKATES  240
DCGSPPASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S3e-22169169Myocyte-specific enhancer factor 2B
1tqe_R3e-22169169Myocyte-specific enhancer factor 2B
1tqe_Q3e-22169169Myocyte-specific enhancer factor 2B
1tqe_P3e-22169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694755.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X2
SwissprotQ392951e-75AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A0J8CYD10.0A0A0J8CYD1_BETVU; Uncharacterized protein
STRINGVIT_13s0158g00100.t013e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-75AGAMOUS-like 15